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  5. Sam_g25754

Sam_g25754


Description : SSU processome assembly factor *(SWA3) & original description: none


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25754

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00250280 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Aev_g01161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g10939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035639_P002 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 72 239
IPR001650 Helicase_C 280 387
No external refs found!