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  5. Sam_g25675

Sam_g25675


Description : ndhA-specific mRNA splicing factor & original description: none


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25675

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ala_g26348 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G053600.1 Ceric.28G053600 ndhA-specific mRNA splicing factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g12037 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.06 OrthoFinder output from all 47 species
Gb_35563 No alias ndhA-specific mRNA splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os02g07360.1 LOC_Os02g07360 ndhA-specific mRNA splicing factor. plastidial RNA... 0.03 OrthoFinder output from all 47 species
Lfl_g34115 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05985 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo109632 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.02 OrthoFinder output from all 47 species
Solyc02g068760.4.1 Solyc02g068760 ndhA-specific mRNA splicing factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 452
IPR002885 Pentatricopeptide_repeat 391 420
IPR002885 Pentatricopeptide_repeat 236 295
IPR002885 Pentatricopeptide_repeat 143 189
IPR002885 Pentatricopeptide_repeat 458 502
IPR002885 Pentatricopeptide_repeat 317 364
No external refs found!