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  5. Sam_g25590

Sam_g25590


Description : Nonsense-Mediated mRNA Decay protein *(SMG7) & original description: none


Gene families : OG0001313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25590
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Adi_g055840 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Aev_g05541 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ala_g02690 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Als_g15194 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene18431.t1 SMG7, Aspi01Gene18431 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015951 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0113.g045981 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G021400.1 SMG7, Ceric.27G021400 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g02039 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Dde_g41012 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g20390 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Gb_21699 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
LOC_Os08g21350.1 SMG7, LOC_Os08g21350 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Len_g48171 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
MA_32980g0010 SMG7 Protein SMG7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp8g12080.1 SMG7 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Msp_g42720 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g15168 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ore_g13643 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g36629 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Ore_g43522 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.06 OrthoFinder output from all 47 species
Pir_g07446 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.04 OrthoFinder output from all 47 species
Pir_g10953 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05947 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025727 SMG7 Nonsense-Mediated mRNA Decay protein *(SMG7) & original... 0.03 OrthoFinder output from all 47 species
Smo410159 SMG7 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 OrthoFinder output from all 47 species
Solyc12g019960.2.1 SMG7, Solyc12g019960 SMG7 Nonsense-Mediated mRNA Decay protein 0.02 OrthoFinder output from all 47 species
Zm00001e009613_P002 SMG7, Zm00001e009613 SMG7 Nonsense-Mediated mRNA Decay protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR019458 Est1-like_N 75 201
IPR018834 DNA/RNA-bd_Est1-type 218 544
No external refs found!