Sam_g25243


Description : not classified & original description: none


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00179320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Adi_g015741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g14389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.04 OrthoFinder output from all 47 species
Ceric.39G058300.1 Ceric.39G058300 not classified & original description: pacid=50582561... 0.03 OrthoFinder output from all 47 species
Dde_g09775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019029001 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.05 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Gb_11322 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.05 OrthoFinder output from all 47 species
Gb_36347 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.05 OrthoFinder output from all 47 species
Len_g17138 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_132279g0010 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 OrthoFinder output from all 47 species
MA_48867g0010 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.03 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Mp5g07730.1 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.02 OrthoFinder output from all 47 species
Msp_g14331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17969 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019915 No alias not classified & original description: CDS=1-2391 0.02 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 171 219
IPR002885 Pentatricopeptide_repeat 235 287
IPR002885 Pentatricopeptide_repeat 142 162
IPR033443 PPR_long 498 665
No external refs found!