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  5. Sam_g24728

Sam_g24728


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24728
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.02 OrthoFinder output from all 47 species
Adi_g018593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g24288 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Als_g23125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aob_g02256 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.05 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.03 OrthoFinder output from all 47 species
Gb_32150 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Mp3g23720.1 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Nbi_g10683 No alias A1-class (Pepsin) protease & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g116420.1.1 Solyc03g116420 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g11119 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 307 332
IPR000571 Znf_CCCH 166 191
No external refs found!