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  5. Sam_g24472

Sam_g24472


Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24472

Target Alias Description ECC score Gene Family Method Actions
AT4G25000 AMY1, ATAMY1 alpha-amylase-like 0.02 OrthoFinder output from all 47 species
Adi_g021932 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08486 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G028300.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50617601... 0.03 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g52710.1 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
MA_336273g0010 AMY1, ATAMY1 alpha amylase 0.02 OrthoFinder output from all 47 species
Msp_g00704 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25602 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 929 991
IPR006047 Glyco_hydro_13_cat_dom 628 908
No external refs found!