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  5. Sam_g24444

Sam_g24444


Description : not classified & original description: none


Gene families : OG0004459 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004459_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24444

Target Alias Description ECC score Gene Family Method Actions
AT2G33435 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g058567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084143 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29248.t1 Aspi01Gene29248 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0017.g014511 No alias not classified & original description: CDS=1-3180 0.03 OrthoFinder output from all 47 species
Ceric.29G067000.1 Ceric.29G067000 not classified & original description: pacid=50625433... 0.06 OrthoFinder output from all 47 species
Dac_g32468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027871001 No alias Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.02 OrthoFinder output from all 47 species
LOC_Os03g04520.2 LOC_Os03g04520 Splicing factor U2af large subunit B OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Len_g40049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g02400.1 No alias Splicing factor U2af large subunit A OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Nbi_g07673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090420.4.1 Solyc09g090420 Splicing factor U2af large subunit B OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Tin_g02875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038951_P001 Zm00001e038951 Splicing factor U2af large subunit A OS=Nicotiana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097354 prenylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA

No InterPro domains available for this sequence

No external refs found!