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  5. Sam_g24400

Sam_g24400


Description : EC_3.2 glycosylase & original description: none


Gene families : OG0000574 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24400
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
Aop_g07340 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013242 AGAL2, AtAGAL2 EC_3.2 glycosylase & original description: CDS=190-1488 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010138 AGAL2, AtAGAL2 EC_3.2 glycosylase & original description: CDS=120-1313 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010141 No alias alpha-galactosidase *(AGAL) & original description: CDS=64-477 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0131.g022129 AGAL2, AtAGAL2 EC_3.2 glycosylase & original description: CDS=464-1702 0.04 OrthoFinder output from all 47 species
Spa_g23145 No alias alpha-galactosidase *(AGAL) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032104 regulation of response to extracellular stimulus IEP HCCA
BP GO:0032107 regulation of response to nutrient levels IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002241 Glyco_hydro_27 93 346
IPR041233 Melibiase_C 363 438
No external refs found!