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  5. Sam_g24331

Sam_g24331


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24331

Target Alias Description ECC score Gene Family Method Actions
Adi_g020571 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015005 No alias E3 ubiquitin ligase & original description: CDS=415-1941 0.03 OrthoFinder output from all 47 species
Cba_g05312 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45270 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18974 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
MA_109588g0010 No alias U-box domain-containing protein 62 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g14730.1 No alias U-box domain-containing protein 62 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g02352 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37224 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024071 No alias E3 ubiquitin ligase & original description: CDS=306-1907 0.03 OrthoFinder output from all 47 species
Solyc04g009340.3.1 Solyc04g009340 U-box domain-containing protein 63 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 166 230
No external refs found!