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  5. Sam_g24193

Sam_g24193


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00240990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55630... 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00153760 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g30805 MEE40 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24733 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56127.t1 Aspi01Gene56127 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.02 OrthoFinder output from all 47 species
Ceric.18G058100.1 Ceric.18G058100 not classified & original description: pacid=50622152... 0.02 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.01 OrthoFinder output from all 47 species
Len_g08185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29766 OTP43 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.01 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Msp_g07149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g070040.3.1 Solyc11g070040 Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Spa_g10895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 592 621
IPR002885 Pentatricopeptide_repeat 136 166
IPR002885 Pentatricopeptide_repeat 236 265
IPR002885 Pentatricopeptide_repeat 720 753
IPR002885 Pentatricopeptide_repeat 342 390
IPR002885 Pentatricopeptide_repeat 658 705
IPR002885 Pentatricopeptide_repeat 274 323
IPR002885 Pentatricopeptide_repeat 173 209
IPR002885 Pentatricopeptide_repeat 519 565
IPR002885 Pentatricopeptide_repeat 413 462
No external refs found!