Sam_g23859

Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g23859

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00260490	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00010p00260730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AT1G26880	No alias	Ribosomal protein L34e superfamily protein	0.12	OrthoFinder output from all 47 species
AT1G69620	RPL34	ribosomal protein L34	0.11	OrthoFinder output from all 47 species
AT3G28900	No alias	Ribosomal protein L34e superfamily protein	0.09	OrthoFinder output from all 47 species
Adi_g023873	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g049423	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g121572	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g128643	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g05903	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g19937	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aob_g25976	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g25989	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene60347.t1	Aspi01Gene60347	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0045.g029897	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0094.g043410	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0225.g058934	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.29G078700.1	Ceric.29G078700	component *(eL34) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.34G068800.1	Ceric.34G068800	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000632.3	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre16.g661050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Dac_g02443	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g20175	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g28753	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g43816	RPL34	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g15490	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g00547	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g19232	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01011419001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019985001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Gb_36060	No alias	component RPL34 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os08g06040.1	LOC_Os08g06040	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os08g33920.1	LOC_Os08g33920	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os09g24690.1	LOC_Os09g24690	component RPL34 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Len_g06750	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g26380	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31825	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_109553g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_175574g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_7581523g0010	No alias	component RPL34 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp4g17040.1	No alias	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Msp_g09133	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g39040	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g20020	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g10506	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g53253	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g66658	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_2940V3.1	RPL34, Pp3c11_2940	Ribosomal protein L34e superfamily protein	0.06	OrthoFinder output from all 47 species
Pp3c1_1800V3.1	RPL34, Pp3c1_1800	Ribosomal protein L34e superfamily protein	0.06	OrthoFinder output from all 47 species
Pp3c25_11980V3.1	Pp3c25_11980	Ribosomal protein L34e superfamily protein	0.07	OrthoFinder output from all 47 species
Pp3c2_34570V3.1	Pp3c2_34570	Ribosomal protein L34e superfamily protein	0.05	OrthoFinder output from all 47 species
Pp3c7_21380V3.1	Pp3c7_21380	Ribosomal protein L34e superfamily protein	0.05	OrthoFinder output from all 47 species
Sam_g05824	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g20232	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g22792	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g23757	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g41835	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo113433	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc02g087930.3.1	Solyc02g087930	component RPL34 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc05g007560.3.1	Solyc05g007560	component RPL34 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Solyc06g069860.4.1	Solyc06g069860	component RPL34 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Spa_g28558	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Spa_g37008	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g26519	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g42576	No alias	component *(eL34) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e004116_P001	Zm00001e004116	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e021733_P002	Zm00001e021733	component RPL34 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e022460_P001	Zm00001e022460	component RPL34 of LSU proteome component	0.01	OrthoFinder output from all 47 species
Zm00001e034114_P001	Zm00001e034114	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e040229_P001	Zm00001e040229	component RPL34 of LSU proteome component	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008195	Ribosomal_L34Ae	66	161

External Links

No external refs found!

Sam_g23859

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation