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  5. Sam_g23667

Sam_g23667


Description : component *(bL28c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23667

Target Alias Description ECC score Gene Family Method Actions
AT2G33450 No alias Ribosomal L28 family 0.05 OrthoFinder output from all 47 species
Adi_g107767 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aev_g02708 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g54254 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g09499 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0087.g042281 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre06.g265800 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dac_g00398 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g00252 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_39628 No alias component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g01110.1 LOC_Os05g01110 component psRPL28 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Len_g11369 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Ore_g11040 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g11041 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g58585 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c5_28500V3.1 Pp3c5_28500 Ribosomal L28 family 0.02 OrthoFinder output from all 47 species
Solyc09g090410.3.1 Solyc09g090410 component psRPL28 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e004728_P001 Zm00001e004728 component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e012787_P001 Zm00001e012787 component psRPL28 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 87 146
No external refs found!