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  5. Sam_g23643

Sam_g23643


Description : not classified & original description: none


Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23643

Target Alias Description ECC score Gene Family Method Actions
Adi_g008965 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Ala_g02348 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Als_g09620 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Als_g27358 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Aop_g11920 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
GSVIVT01019746001 MURE, PDE316, ATMURE RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Len_g12297 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
MA_961480g0010 MURE, PDE316, ATMURE PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp6g20740.1 MURE, PDE316, ATMURE PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Nbi_g12757 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!