AMTR_s00029p00134930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.154

Description : Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0001933 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001933_tree ,
OG_02_0009073 (LandPlants) Phylogenetic Tree(s): OG_02_0009073_tree ,
OG_03_0006241 (SeedPlants) Phylogenetic Tree(s): OG_03_0006241_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00134930
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g42000.1 No alias no hits & (original description: none) 0.02 LandPlants
LOC_Os02g42000.1 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008797 PSII_PsbQ 5 108
No external refs found!