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  5. Sam_g21361

Sam_g21361


Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g21361

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 RAT5, HTA1,... Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G51060 HTA10 histone H2A 10 0.02 OrthoFinder output from all 47 species
AT4G27230 HTA2 histone H2A 2 0.05 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.02 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g043980 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17952 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25411.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76436 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G127000.1 HTA7, Ceric.01G127000 histone *(H2A) & original description: pacid=50592416... 0.03 OrthoFinder output from all 47 species
Ceric.01G127100.1 HTA6, Ceric.01G127100 histone *(H2A) & original description: pacid=50591885... 0.03 OrthoFinder output from all 47 species
Ceric.06G046500.1 HTA7, Ceric.06G046500 histone *(H2A) & original description: pacid=50619602... 0.03 OrthoFinder output from all 47 species
Ceric.11G083100.1 HTA7, Ceric.11G083100 histone *(H2A) & original description: pacid=50596723... 0.03 OrthoFinder output from all 47 species
Ceric.1Z006200.1 HTA7, Ceric.1Z006200 histone *(H2A) & original description: pacid=50569283... 0.03 OrthoFinder output from all 47 species
Ceric.25G059300.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50594046... 0.03 OrthoFinder output from all 47 species
Ceric.37G036600.1 HTA7, Ceric.37G036600 histone *(H2A) & original description: pacid=50616072... 0.06 OrthoFinder output from all 47 species
Cre06.g264750 HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g264950 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g265350 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g266700 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g268050 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g268300 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g271350 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g273900 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274200 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274800 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g275850 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276500 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276950 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g504500 HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Cre12.g504750 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g505550 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g506250 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g570100 HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g708550 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g709200 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g710400 HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Cre17.g711700 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g713400 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g714500 HTA10 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05168 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11405 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_06384 HTA6 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os01g31800.1 HTA12, LOC_Os01g31800 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os05g02300.1 HTA12, LOC_Os05g02300 histone (H2A) 0.04 OrthoFinder output from all 47 species
LOC_Os08g33100.1 HTA2, LOC_Os08g33100 histone (H2A) 0.02 OrthoFinder output from all 47 species
Len_g05493 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_94328g0020 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
MA_962778g0010 HTA7 histone (H2A) 0.06 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Mp3g00840.1 HTA10 histone (H2A) 0.04 OrthoFinder output from all 47 species
Nbi_g00069 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c10_13610V3.1 GAMMA-H2AX,... gamma histone variant H2AX 0.02 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48398 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc06g084430.4.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc09g074300.1.1 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc09g082710.3.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc12g005270.2.1 HTA10, Solyc12g005270 histone (H2A) 0.03 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03519 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16293 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46345 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14389 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44326 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010515_P001 HTA2, Zm00001e010515 histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e011643_P001 HTA6, Zm00001e011643 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e020483_P001 HTA6, Zm00001e020483 histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e033014_P001 HTA6, Zm00001e033014 histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e035183_P002 RAT5, HTA1,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e039735_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0030991 intraciliary transport particle A IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 3 75
IPR032454 Histone_H2A_C 78 111
No external refs found!