Lfl_g27478

Description : aminoacyl-tRNA binding factor *(eEF1A)) & original description: none

Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g27478
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00237190	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.02	OrthoFinder output from all 47 species
AMTR_s00059p00216110	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.02	OrthoFinder output from all 47 species
Ala_g31488	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Als_g38541	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Als_g39127	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.01	OrthoFinder output from all 47 species
Als_g51450	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.01	OrthoFinder output from all 47 species
Aob_g19399	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0291.g063341	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Cba_g34810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.06G056100.1	Ceric.06G056100	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021352.57	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.01	OrthoFinder output from all 47 species
Dac_g40329	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g09531	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01025638001	No alias	Elongation factor 1-alpha OS=Zea mays	0.02	OrthoFinder output from all 47 species
Lfl_g17369	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g22816	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.02	OrthoFinder output from all 47 species
Mp6g00930.1	No alias	Elongation factor 1-alpha OS=Vicia faba...	0.02	OrthoFinder output from all 47 species
Mp6g18130.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.02	OrthoFinder output from all 47 species
Sam_g07574	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Sam_g16997	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Sam_g16999	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Sam_g29350	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sam_g39768	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g33152	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	248	313
IPR004160	Transl_elong_EFTu/EF1A_C	321	404
IPR000795	T_Tr_GTP-bd_dom	5	221

External Links

No external refs found!

Lfl_g27478

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation