Sam_g20427

Description : component *(eL38) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0004541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g20427

Target	Alias	Description	ECC score	Gene Family Method
AT3G59540	No alias	Ribosomal L38e protein family	0.02	OrthoFinder output from all 47 species
Aspi01Gene68251.t1	Aspi01Gene68251	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0319.g064444	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0662.g081457	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ceric.28G050900.1	Ceric.28G050900	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.35G022100.1	Ceric.35G022100	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.35G022200.1	Ceric.35G022200	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.35G022300.1	Ceric.35G022300	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021719.6	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Cre07.g325746	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Dac_g44338	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01010854001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
GSVIVT01019051001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Gb_16529	No alias	component RPL38 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Gb_29252	No alias	component RPL38 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os11g24610.1	LOC_Os11g24610	component RPL38 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Lfl_g20573	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_20588g0010	No alias	component RPL38 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Nbi_g05552	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g10920	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c10_20240V3.1	Pp3c10_20240	Ribosomal L38e protein family	0.09	OrthoFinder output from all 47 species
Pp3c12_17990V3.1	Pp3c12_17990	Ribosomal L38e protein family	0.02	OrthoFinder output from all 47 species
Pp3c4_11700V3.1	Pp3c4_11700	Ribosomal L38e protein family	0.1	OrthoFinder output from all 47 species
Smo270247	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc05g055640.4.1	Solyc05g055640	component RPL38 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	37	104

External Links

No external refs found!

Sam_g20427

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation