Sam_g20161

Description : protein involved in PS-I assembly *(PPD1) & original description: none

Gene families : OG0006534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006534_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g20161

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00103160	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem...	0.04	OrthoFinder output from all 47 species
AT4G15510	No alias	Photosystem II reaction center PsbP family protein	0.03	OrthoFinder output from all 47 species
Aev_g12134	No alias	protein involved in PS-I assembly *(PPD1) & original...	0.04	OrthoFinder output from all 47 species
Ceric.27G030500.1	Ceric.27G030500	protein involved in PS-I assembly *(PPD1) & original...	0.03	OrthoFinder output from all 47 species
Dde_g22755	No alias	protein involved in PS-I assembly *(PPD1) & original...	0.02	OrthoFinder output from all 47 species
LOC_Os12g37710.1	LOC_Os12g37710	PPD1 protein involved in PS-I assembly	0.02	OrthoFinder output from all 47 species
Mp1g27590.1	No alias	PPD1 protein involved in PS-I assembly	0.02	OrthoFinder output from all 47 species
Pir_g10011	No alias	protein involved in PS-I assembly *(PPD1) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g08071	No alias	protein involved in PS-I assembly *(PPD1) & original...	0.04	OrthoFinder output from all 47 species
Spa_g12584	No alias	protein involved in PS-I assembly *(PPD1) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e002887_P002	Zm00001e002887	PPD1 protein involved in PS-I assembly	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	Interproscan
CC	GO:0009654	photosystem II oxygen evolving complex	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0019898	extrinsic component of membrane	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004476	mannose-6-phosphate isomerase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002683	PsbP_C	80	256

External Links

No external refs found!