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  5. Sam_g20001

Sam_g20001


Description : not classified & original description: none


Gene families : OG0003174 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g20001

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0233.g059432 No alias not classified & original description: CDS=1-870 0.02 OrthoFinder output from all 47 species
Cba_g13721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo153690 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e003580_P006 Zm00001e003580 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 199 229
IPR001876 Znf_RanBP2 248 278
IPR001876 Znf_RanBP2 23 52
No external refs found!