Sam_g19936

Description : not classified & original description: none

Gene families : OG0000011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19936

Target	Alias	Description	ECC score	Gene Family Method
Adi_g009892	CRK8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g14921	ORF111A	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g24677	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g43490	CRK8	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g35305	CRK8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene00057.t1	Aspi01Gene00057	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene37964.t1	Aspi01Gene37964	catalytic protein *(MurB) of UDP-N-acetylmuramic acid...	0.03	OrthoFinder output from all 47 species
Aspi01Gene41125.t1	ORF240B, Aspi01Gene41125	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g11362	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g28373	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z217100.1	Ceric.1Z217100	not classified & original description: pacid=50618850...	0.03	OrthoFinder output from all 47 species
Pir_g16297	ORF240B	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g14589	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30752	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g58717	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g32955	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
CC	GO:0032039	integrator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	75	145
IPR001584	Integrase_cat-core	158	259

External Links

No external refs found!

Sam_g19936

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation