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  5. Sam_g19861

Sam_g19861


Description : D-arabinose-5-phosphate isomerase & original description: none


Gene families : OG0006389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19861

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00050020 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan... 0.03 OrthoFinder output from all 47 species
Adi_g023295 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17580 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39190 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27664 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05351 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05459 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028350001 No alias Cell wall.pectin.rhamnogalacturonan... 0.03 OrthoFinder output from all 47 species
Gb_31024 No alias D-arabinose-5-phosphate isomerase 0.02 OrthoFinder output from all 47 species
Len_g07481 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05277 No alias D-arabinose-5-phosphate isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06523 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g01638 No alias D-arabinose-5-phosphate isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014347 No alias D-arabinose-5-phosphate isomerase & original... 0.03 OrthoFinder output from all 47 species
Tin_g17993 No alias D-arabinose-5-phosphate isomerase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0097367 carbohydrate derivative binding IEA Interproscan
BP GO:1901135 carbohydrate derivative metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001347 SIS_dom 70 196
IPR000644 CBS_dom 227 283
IPR000644 CBS_dom 303 350
No external refs found!