Sam_g19670

Description : component *(uL18c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0005910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19670
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00209880	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
AT1G48350	No alias	Ribosomal L18p/L5e family protein	0.05	OrthoFinder output from all 47 species
Aev_g28610	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g03843	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g20657	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.13G022200.1	Ceric.13G022200	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre01.g052100	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dac_g05557	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g31625	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Dde_g24129	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Gb_12756	No alias	component psRPL18 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os03g61260.1	LOC_Os03g61260	component psRPL18 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g30980	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_7609850g0010	No alias	50S ribosomal protein L18, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp6g08500.1	No alias	component psRPL18 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Ore_g07265	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ppi_g02809	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017759	No alias	EC_3.2 glycosylase & original description: CDS=437-952	0.03	OrthoFinder output from all 47 species
Smo143891	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Solyc12g098890.2.1	Solyc12g098890	component psRPL18 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Spa_g00581	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Tin_g00498	No alias	component *(uL18c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e006246_P001	Zm00001e006246	component psRPL18 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005484	Ribosomal_L18	51	169

External Links

No external refs found!

Sam_g19670

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation