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  5. Sam_g19596

Sam_g19596


Description : component *(GID7) of GID ubiquitination complex & original description: none


Gene families : OG0002376 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19596
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186000 evm_27.TU.AmTr_v1... WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g075762 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
Cre08.g382515 No alias WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g18732 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
Len_g16239 No alias component *(GID7) of GID ubiquitination complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g01173 No alias component *(GID7) of GID ubiquitination complex &... 0.03 OrthoFinder output from all 47 species
Solyc12g006300.2.1 Solyc12g006300 WD repeat-containing protein 26 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g04565 No alias component *(GID7) of GID ubiquitination complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 478 517
IPR001680 WD40_repeat 353 391
IPR001680 WD40_repeat 267 303
IPR001680 WD40_repeat 524 560
IPR001680 WD40_repeat 315 349
No external refs found!