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  5. Sam_g19593

Sam_g19593


Description : not classified & original description: none


Gene families : OG0000772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19593

Target Alias Description ECC score Gene Family Method Actions
AT5G03250 No alias Phototropic-responsive NPH3 family protein 0.03 OrthoFinder output from all 47 species
Aev_g18590 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene08861.t1 Aspi01Gene08861 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene17557.t1 Aspi01Gene17557 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70261.t1 Aspi01Gene70261 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Cba_g36901 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ceric.22G012600.1 Ceric.22G012600 not classified & original description: pacid=50614691... 0.02 OrthoFinder output from all 47 species
Ceric.31G041900.1 Ceric.31G041900 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Gb_37723 No alias BTB/POZ domain-containing protein At1g30440... 0.02 OrthoFinder output from all 47 species
LOC_Os01g57230.1 LOC_Os01g57230 BTB/POZ domain-containing protein At5g03250... 0.03 OrthoFinder output from all 47 species
LOC_Os03g55830.1 LOC_Os03g55830 BTB/POZ domain-containing protein At5g66560... 0.02 OrthoFinder output from all 47 species
LOC_Os12g41910.2 LOC_Os12g41910 BTB/POZ domain-containing protein At1g30440... 0.04 OrthoFinder output from all 47 species
Lfl_g29709 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
MA_10430653g0010 No alias BTB/POZ domain-containing protein At1g30440... 0.02 OrthoFinder output from all 47 species
MA_38486g0010 No alias BTB/POZ domain-containing protein At1g30440... 0.02 OrthoFinder output from all 47 species
Msp_g13112 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Ore_g27112 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Pnu_g17535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009652 No alias not classified & original description: CDS=136-2424 0.03 OrthoFinder output from all 47 species
Solyc09g007820.2.1 Solyc09g007820 BTB/POZ domain-containing protein At5g03250... 0.03 OrthoFinder output from all 47 species
Spa_g05885 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Spa_g39042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07131 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquiTin... 0.03 OrthoFinder output from all 47 species
Zm00001e019629_P002 Zm00001e019629 BTB/POZ domain-containing protein At5g03250... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0007265 Ras protein signal transduction IEP HCCA
BP GO:0007266 Rho protein signal transduction IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 209 494
IPR000210 BTB/POZ_dom 27 118
No external refs found!