Sam_g19588

Description : component *(VIP4/LEO1) of PAF1C transcription initiation and elongation complex & original description: none

Gene families : OG0004350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004350_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19588

Target	Alias	Description	ECC score	Gene Family Method
AT5G61150	VIP4	leo1-like family protein	0.02	OrthoFinder output from all 47 species
Adi_g075389	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Aop_g14527	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Azfi_s0193.g057140	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Cba_g10935	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Dcu_g06383	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
GSVIVT01007883001	VIP4	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
LOC_Os12g38970.1	VIP4, LOC_Os12g38970	component VIP4/LEO1 of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Lfl_g04886	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Ore_g37591	VIP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g17240	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Tin_g32725	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Zm00001e032701_P001	VIP4, Zm00001e032701	component VIP4/LEO1 of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
CC	GO:0016593	Cdc73/Paf1 complex	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007149	Leo1	252	413

External Links

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Sam_g19588

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation