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  5. Sam_g19394

Sam_g19394


Description : not classified & original description: none


Gene families : OG0002427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002427_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19394

Target Alias Description ECC score Gene Family Method Actions
AT4G33400 No alias Vacuolar import/degradation, Vid27-related protein 0.07 OrthoFinder output from all 47 species
Ala_g23497 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g12821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g00721 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene52269.t1 Aspi01Gene52269 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0261.g060766 No alias not classified & original description: CDS=317-2245 0.04 OrthoFinder output from all 47 species
Ceric.22G002700.1 Ceric.22G002700 not classified & original description: pacid=50615126... 0.04 OrthoFinder output from all 47 species
Cre16.g657550 No alias Protein CYPRO4 OS=Cynara cardunculus 0.02 OrthoFinder output from all 47 species
Dcu_g09878 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g25202 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009497001 No alias Protein CYPRO4 OS=Cynara cardunculus 0.08 OrthoFinder output from all 47 species
LOC_Os02g08190.1 LOC_Os02g08190 Protein CYPRO4 OS=Cynara cardunculus... 0.08 OrthoFinder output from all 47 species
Len_g12390 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37219 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_12899g0010 No alias Protein CYPRO4 OS=Cynara cardunculus... 0.03 OrthoFinder output from all 47 species
Ppi_g02206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g078940.3.1 Solyc04g078940 Protein CYPRO4 OS=Cynara cardunculus... 0.05 OrthoFinder output from all 47 species
Spa_g13061 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g04658 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013808_P001 Zm00001e013808 Protein CYPRO4 OS=Cynara cardunculus... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013863 VID27_C 298 564
No external refs found!