Sam_g19302

Description : methylation reader Alfin of PRC1 complex & original description: none

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19302

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00099p00155940	AL5,...	RNA biosynthesis.transcriptional activation.Alfin-like...	0.05	OrthoFinder output from all 47 species
AT5G05610	AL1	alfin-like 1	0.02	OrthoFinder output from all 47 species
AT5G20510	AL5	alfin-like 5	0.02	OrthoFinder output from all 47 species
Adi_g050291	AL7	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Ala_g10202	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Ala_g13113	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Als_g04779	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Als_g05455	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Als_g21260	AL1	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene09474.t1	AL1, Aspi01Gene09474	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Cba_g03032	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Cba_g23274	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Cba_g33236	AL2	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Cba_g33237	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Ceric.30G070100.1	AL1, Ceric.30G070100	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.26	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g12437	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Dac_g30272	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Dde_g05713	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01016791001	AL5	RNA biosynthesis.transcriptional activation.Alfin-like...	0.03	OrthoFinder output from all 47 species
Gb_11603	AL5	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
Gb_22969	AL5	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os01g66420.1	AL5, LOC_Os01g66420	Alfin-like transcription factor	0.01	OrthoFinder output from all 47 species
Len_g12567	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Lfl_g01104	AL4	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
MA_10430679g0010	AL2	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Nbi_g04066	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Nbi_g04136	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Nbi_g04610	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Ore_g19754	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Pir_g03364	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Pir_g04668	AL2	methylation reader Alfin of PRC1 complex & original...	0.04	OrthoFinder output from all 47 species
Pir_g12876	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Pir_g13361	AL1	methylation reader Alfin of PRC1 complex & original...	0.05	OrthoFinder output from all 47 species
Ppi_g17589	AL4	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Ppi_g45953	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Ppi_g49107	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008866	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012709	AL1	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Sam_g18886	No alias	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Solyc01g102760.3.1	AL6, Solyc01g102760	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species
Solyc09g005360.3.1	AL1, Solyc09g005360	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
Spa_g30132	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Tin_g03128	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Tin_g05421	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g15615	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e006169_P001	AL2, Zm00001e006169	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e028587_P002	AL4, Zm00001e028587	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e035527_P001	AL5, Zm00001e035527	Alfin-like transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021998	Alfin_N	9	134
IPR019787	Znf_PHD-finger	183	233

External Links

No external refs found!

Sam_g19302

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation