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  5. Sam_g19265

Sam_g19265


Description : pre-rRNA processing endonuclease involved in ITS1 rRNA removal *(NOB1) & original description: none


Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19265

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00064100 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT5G41190 No alias CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020964.11 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01019776001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
MA_101933g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g16460.1 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.02 OrthoFinder output from all 47 species
Pir_g20042 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR014881 NOB1_Zn-bd 485 555
IPR033411 Ribonuclease_PIN 46 133
No external refs found!