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  5. Sam_g18903

Sam_g18903


Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18903

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT3G30260 AGL79 AGAMOUS-like 79 0.03 OrthoFinder output from all 47 species
Adi_g082624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05851 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11269 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28162 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14271 AGL104 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09954 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17970 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18076 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32548 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene15807.t1 AGL6, Aspi01Gene15807 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15820.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15825.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17774.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17806.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49762.t1 GL19, AGL19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63673.t1 STK, AGL11,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0014.g013689 No alias not classified & original description: CDS=279-872 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037211 AGL104 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059800 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2186.g109823 No alias not classified & original description: CDS=5-496 0.03 OrthoFinder output from all 47 species
Cba_g13784 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33793 AGL14 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g41755 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.02 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.27G057900.1 STK, AGL11,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G052700.1 AGL104, Ceric.37G052700 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g08553 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20775 AGL16 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g22677 AGL65 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24818 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25334 AGL4, SEP2 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46439 AGL7, AP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07431 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09712 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27385 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010221001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01018446001 AGL42 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01021534001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01022182001 AGL104 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g36924.1 AGL16, LOC_Os02g36924 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os03g03070.1 GL19, AGL19,... MADS-box transcription factor 50 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os04g38780.1 AGL16, LOC_Os04g38780 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
LOC_Os05g11414.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os09g32948.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g08514 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09144 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20789 SHP2, AGL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23837 AGL6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g46041 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16699 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432817g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_175522g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_254338g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
MA_9771g0010 SHP2, AGL5 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_9972589g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g20675 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31321 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38153 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05686 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41761 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05105 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g48804 AGL8, FUL regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 OrthoFinder output from all 47 species
Pnu_g22364 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09107 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41504 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61246 AGL21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003425 AGL15 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013783 STK, AGL11 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g15354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26914 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30262 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.01 OrthoFinder output from all 47 species
Solyc03g114840.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc06g064840.4.1 STK, AGL11,... no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.02 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g16602 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53600 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g23260 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g32794 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000846_P003 AGL4, SEP2,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e015447_P001 AGL6, Zm00001e015447 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e016964_P001 GL19, AGL19,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Zm00001e019029_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e033123_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e038716_P004 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 148 234
IPR002100 TF_MADSbox 73 120
No external refs found!