Sam_g18622


Description : EC_3.2 glycosylase & original description: none


Gene families : OG0006312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006312_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18622

Target Alias Description ECC score Gene Family Method Actions
AT5G14950 ATGMII, GMII golgi alpha-mannosidase II 0.03 OrthoFinder output from all 47 species
LOC_Os06g13650.2 ATGMII, GMII,... class-II alpha-mannosidase II 0.02 OrthoFinder output from all 47 species
Len_g00766 ATGMII, GMII EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02472 ATGMII, GMII EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010647 ATGMII, GMII EC_3.2 glycosylase & original description: CDS=93-3632 0.04 OrthoFinder output from all 47 species
Zm00001e030904_P004 ATGMII, GMII,... class-II alpha-mannosidase II 0.02 OrthoFinder output from all 47 species
Zm00001e036050_P001 ATGMII, GMII,... class-II alpha-mannosidase II 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEA Interproscan
BP GO:0006013 mannose metabolic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000602 Glyco_hydro_38_N 115 443
IPR015341 Glyco_hydro_38_cen 449 551
IPR011682 Glyco_hydro_38_C 703 912
No external refs found!