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  5. Sam_g18604

Sam_g18604


Description : not classified & original description: none


Gene families : OG0000728 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18604

Target Alias Description ECC score Gene Family Method Actions
Adi_g111900 ATCRE1, WOL,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07983 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50107 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05881 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G090600.1 AHK2, HK2,... not classified & original description: pacid=50635231... 0.02 OrthoFinder output from all 47 species
Smo100467 AHK2, HK2 Probable histidine kinase 2 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 471 536
IPR007895 MASE1 319 427
IPR007895 MASE1 18 204
IPR001789 Sig_transdc_resp-reg_receiver 896 1012
IPR003594 HATPase_C 583 765
No external refs found!