AMTR_s00029p00110030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.116

Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0006821 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006821_tree ,
OG_02_0009059 (LandPlants) Phylogenetic Tree(s): OG_02_0009059_tree ,
OG_03_0009047 (SeedPlants) Phylogenetic Tree(s): OG_03_0009047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00110030
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00241430 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00029p00051450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56550... 0.05 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.05 Archaeplastida
AMTR_s00059p00175950 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.05 Archaeplastida
Solyc02g072010.3.1 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.04 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.05 SeedPlants
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 140 163
IPR002885 Pentatricopeptide_repeat 71 117
IPR002885 Pentatricopeptide_repeat 168 211
IPR002885 Pentatricopeptide_repeat 245 273
No external refs found!