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  5. Sam_g18047

Sam_g18047


Description : component *(MBD9) of SWR1 chromatin remodeling complex & original description: none


Gene families : OG0006711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18047
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267510 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.02 OrthoFinder output from all 47 species
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.04 OrthoFinder output from all 47 species
Adi_g011991 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Aev_g28617 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Ala_g17040 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Als_g03908 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Aop_g10631 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Azfi_s0092.g043010 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ceric.19G068300.1 ATMBD9, MBD9,... component *(MBD9) of SWR1 chromatin remodeling complex &... 0.07 OrthoFinder output from all 47 species
Dac_g15509 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g37526 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g19882 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020232001 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.02 OrthoFinder output from all 47 species
Gb_22434 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.05 OrthoFinder output from all 47 species
LOC_Os02g09920.1 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.02 OrthoFinder output from all 47 species
Len_g47194 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
MA_10435977g0020 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.05 OrthoFinder output from all 47 species
Mp8g01420.1 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.02 OrthoFinder output from all 47 species
Nbi_g06340 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Pir_g15536 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Ppi_g08937 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013974 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Solyc05g005640.4.1 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.05 OrthoFinder output from all 47 species
Spa_g49760 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Tin_g01305 ATMBD9, MBD9 component *(MBD9) of SWR1 chromaTin remodeling complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 1175 1222
IPR028941 WHIM2_dom 1554 1643
IPR001739 Methyl_CpG_DNA-bd 306 359
IPR028942 WHIM1_dom 1260 1301
No external refs found!