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  5. Sam_g18039

Sam_g18039


Description : scaffold nucleoporin of nuclear pore complex *(NUP188) & original description: none


Gene families : OG0006216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18039

Target Alias Description ECC score Gene Family Method Actions
Adi_g055512 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Als_g16173 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Cba_g13637 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Ceric.17G079400.1 Ceric.17G079400 scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Ceric.17G079700.1 Ceric.17G079700 scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01024075001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
LOC_Os10g06610.1 LOC_Os10g06610 NUP188 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Solyc11g039880.2.1 Solyc11g039880 NUP188 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 43 164
No external refs found!