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  5. Sam_g17949

Sam_g17949


Description : not classified & original description: none


Gene families : OG0000791 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17949

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00263410 evm_27.TU.AmTr_v1... Uncharacterized protein At2g39795, mitochondrial... 0.03 OrthoFinder output from all 47 species
AT2G39795 No alias Mitochondrial glycoprotein family protein 0.03 OrthoFinder output from all 47 species
AT2G41600 No alias Mitochondrial glycoprotein family protein 0.03 OrthoFinder output from all 47 species
AT3G55605 No alias Mitochondrial glycoprotein family protein 0.04 OrthoFinder output from all 47 species
Adi_g108141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g00872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15202 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g10589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00459 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g27103 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g34398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G023100.1 Ceric.06G023100 not classified & original description: pacid=50619513... 0.05 OrthoFinder output from all 47 species
Ceric.07G042400.1 Ceric.07G042400 not classified & original description: pacid=50627745... 0.02 OrthoFinder output from all 47 species
Ceric.10G002400.1 Ceric.10G002400 not classified & original description: pacid=50611676... 0.04 OrthoFinder output from all 47 species
Cre04.g225600 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre10.g447100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g11965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016468001 No alias Uncharacterized protein At2g39795, mitochondrial... 0.04 OrthoFinder output from all 47 species
Gb_30186 No alias Uncharacterized protein At2g39795, mitochondrial... 0.03 OrthoFinder output from all 47 species
LOC_Os01g05010.1 LOC_Os01g05010 Uncharacterized protein At2g39795, mitochondrial... 0.02 OrthoFinder output from all 47 species
LOC_Os06g22070.1 LOC_Os06g22070 Uncharacterized protein At2g39795, mitochondrial... 0.04 OrthoFinder output from all 47 species
LOC_Os08g34130.1 LOC_Os08g34130 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g08735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g41032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_123491g0010 No alias Uncharacterized protein At2g39795, mitochondrial... 0.08 OrthoFinder output from all 47 species
MA_5294g0010 No alias Uncharacterized protein At2g39795, mitochondrial... 0.05 OrthoFinder output from all 47 species
Msp_g05500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009111 No alias not classified & original description: CDS=26-742 0.02 OrthoFinder output from all 47 species
Solyc03g079930.3.1 Solyc03g079930 Uncharacterized protein At2g39795, mitochondrial... 0.02 OrthoFinder output from all 47 species
Solyc03g117080.4.1 Solyc03g117080 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc06g065800.3.1 Solyc06g065800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g01691 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g09185 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025796_P002 Zm00001e025796 Uncharacterized protein At2g39795, mitochondrial... 0.02 OrthoFinder output from all 47 species
Zm00001e036951_P001 Zm00001e036951 Uncharacterized protein At2g39795, mitochondrial... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003428 MAM33 75 278
No external refs found!