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  5. Sam_g17814

Sam_g17814


Description : organelle RNA splicing factor *(APO) & original description: none


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17814

Target Alias Description ECC score Gene Family Method Actions
Als_g04268 APO1 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03932 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08716 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09606 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g25543 APO1 organelle RNA splicing factor *(APO) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01007874001 APO3 APO protein 3, mitochondrial OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01018392001 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023615001 emb1629, APO2 APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g52520.4 APO1, LOC_Os04g52520 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g20099 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09642 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g02046 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00805 APO1 organelle RNA splicing factor *(APO) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26504 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Smo84056 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc08g080250.4.1 APO1, Solyc08g080250 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g24427 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006942_P002 APO1, Zm00001e006942 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e023481_P001 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023342 APO_dom 42 227
IPR023342 APO_dom 303 415
No external refs found!