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  5. Sam_g17525

Sam_g17525


Description : mechanosensitive ion channel *(Piezo) & original description: none


Gene families : OG0004173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004173_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17525

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00144330 evm_27.TU.AmTr_v1... Piezo-type mechanosensitive ion channel homolog... 0.02 OrthoFinder output from all 47 species
Ala_g12480 No alias mechanosensitive ion channel *(Piezo) & original... 0.02 OrthoFinder output from all 47 species
Aob_g33254 No alias mechanosensitive ion channel *(Piezo) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g027082 No alias mechanosensitive ion channel *(Piezo) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.160 No alias Piezo-type mechanosensitive ion channel homolog... 0.02 OrthoFinder output from all 47 species
Cre09.g402108 No alias Piezo-type mechanosensitive ion channel homolog... 0.03 OrthoFinder output from all 47 species
Dde_g01778 No alias mechanosensitive ion channel *(Piezo) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01011059001 No alias Piezo-type mechanosensitive ion channel homolog... 0.03 OrthoFinder output from all 47 species
LOC_Os01g29230.1 LOC_Os01g29230 mechanosensitive ion channel (Piezo) 0.03 OrthoFinder output from all 47 species
Mp2g12070.1 No alias mechanosensitive ion channel (Piezo) 0.05 OrthoFinder output from all 47 species
Msp_g14803 No alias mechanosensitive ion channel *(Piezo) & original... 0.05 OrthoFinder output from all 47 species
Pir_g04358 No alias mechanosensitive ion channel *(Piezo) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008885 No alias mechanosensitive ion channel *(Piezo) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g074110.4.1 Solyc09g074110 mechanosensitive ion channel (Piezo) 0.02 OrthoFinder output from all 47 species
Zm00001e017676_P003 Zm00001e017676 mechanosensitive ion channel (Piezo) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR031334 Piezo_RRas-bd_dom 2093 2471
No external refs found!