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  5. Sam_g17524

Sam_g17524


Description : component *(MED23) of tail module of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0006930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17524
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00196600 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
AT1G23230 No alias CONTAINS InterPro DOMAIN/s: Mediator complex subunit... 0.03 OrthoFinder output from all 47 species
Adi_g024481 No alias component *(MED23) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Aev_g06179 No alias component *(MED23) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ala_g11876 No alias component *(MED23) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Als_g03901 No alias component *(MED23) of tail module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Aspi01Gene21346.t1 Aspi01Gene21346 component *(MED23) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038661 No alias component *(MED23) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Dcu_g32031 No alias component *(MED23) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Dde_g00989 No alias component *(MED23) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
GSVIVT01011680001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Gb_41520 No alias component MED23 of tail module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49992.1 LOC_Os02g49992 component MED23 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Len_g23451 No alias component *(MED23) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Lfl_g17747 No alias component *(MED23) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Mp1g05140.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Pir_g16646 No alias component *(MED23) of tail module of MEDIATOR... 0.06 OrthoFinder output from all 47 species
Solyc05g016440.3.1 Solyc05g016440 component MED23 of tail module of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Solyc05g016460.2.1 Solyc05g016460 component MED23 of tail module of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Spa_g18715 No alias component *(MED23) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Zm00001e015737_P001 Zm00001e015737 component MED23 of tail module of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021629 Mediator_Med23 654 1142
No external refs found!