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  5. Sam_g17521

Sam_g17521


Description : regulatory protein *(ZC11A) of mRNA export & original description: none


Gene families : OG0001116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17521

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00081p00088180 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Adi_g075164 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Aob_g11153 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Cba_g60496 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G028800.1 Ceric.21G028800 regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Dac_g05770 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Dac_g31773 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ehy_g01566 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01010243001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
LOC_Os04g57600.1 LOC_Os04g57600 C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species
Lfl_g04961 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
MA_17019g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Mp2g02990.1 No alias C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species
Ore_g37675 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Pir_g09783 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Pir_g30352 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Pnu_g01161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008491 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Sam_g09314 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Smo441325 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Solyc04g008550.4.1 Solyc04g008550 C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species
Solyc12g006620.2.1 Solyc12g006620 C3H zinc finger transcription factor. regulatory... 0.01 OrthoFinder output from all 47 species
Spa_g52457 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023520_P001 Zm00001e023520 C3H zinc finger transcription factor. regulatory... 0.04 OrthoFinder output from all 47 species
Zm00001e041908_P001 Zm00001e041908 C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041686 Znf-CCCH_3 94 150
IPR000571 Znf_CCCH 171 193
No external refs found!