Sam_g17490


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17490

Target Alias Description ECC score Gene Family Method Actions
Adi_g055309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088267 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15632 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21523 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38619 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g40163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55317 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27300 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012423 No alias not classified & original description: CDS=62-2707 0.02 OrthoFinder output from all 47 species
Azfi_s0016.g014220 No alias not classified & original description: CDS=1-2523 0.02 OrthoFinder output from all 47 species
Azfi_s0093.g043186 No alias not classified & original description: CDS=1-3252 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.01 OrthoFinder output from all 47 species
Azfi_s0219.g058598 No alias not classified & original description: CDS=1-1215 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.01 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.01 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.01 OrthoFinder output from all 47 species
Azfi_s1399.g102576 No alias not classified & original description: CDS=1-1533 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.01 OrthoFinder output from all 47 species
Cba_g04732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07388 MEF21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10259 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20804 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75394 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G020600.1 Ceric.05G020600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G012100.1 VAC1, ECB2,... not classified & original description: pacid=50635600... 0.02 OrthoFinder output from all 47 species
Ceric.17G075500.1 Ceric.17G075500 not classified & original description: pacid=50617952... 0.02 OrthoFinder output from all 47 species
Ceric.21G027500.1 Ceric.21G027500 not classified & original description: pacid=50603039... 0.03 OrthoFinder output from all 47 species
Ceric.23G007100.1 Ceric.23G007100 not classified & original description: pacid=50611480... 0.03 OrthoFinder output from all 47 species
Ceric.25G001500.1 Ceric.25G001500 not classified & original description: pacid=50593180... 0.02 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.01 OrthoFinder output from all 47 species
Dac_g11875 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g29239 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01720 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06991 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19629 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33060 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g03795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23334 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g28692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g39340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02334 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g03887 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43486 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g04234 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57330 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g18900 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g41079 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008531 riboflavin kinase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 614 661
IPR002885 Pentatricopeptide_repeat 277 325
IPR002885 Pentatricopeptide_repeat 512 559
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 369 396
No external refs found!