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  5. Sam_g17461

Sam_g17461


Description : not classified & original description: none


Gene families : OG0002966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002966_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17461

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00036460 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT5G24740 No alias Protein of unknown function (DUF1162) 0.05 OrthoFinder output from all 47 species
Adi_g011972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0359.g066851 No alias not classified & original description: CDS=121-8928 0.02 OrthoFinder output from all 47 species
Ceric.03G037800.1 Ceric.03G037800 not classified & original description: pacid=50571745... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.91 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.50 No alias No description available 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021440.8 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01019366001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01019371001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_28330 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g02350.1 LOC_Os08g02350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_174037g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g25736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo439148 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e029198_P001 Zm00001e029198 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR031646 VPS13_extend_chorein 148 377
IPR031642 VPS13_mid_RBG 639 873
IPR026854 VPS13-like_N 9 123
IPR031645 VPS13_DH-like 2585 2757
IPR009543 VPS13_VAB 2047 2272
No external refs found!