Sam_g17174

Description : transcriptional regulator *(HsfA1) & original description: none

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g17174

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00075850	HSFA1B, ATHSF3,...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
AT3G02990	HSFA1E, ATHSFA1E	heat shock transcription factor A1E	0.02	OrthoFinder output from all 47 species
AT5G62020	AT-HSFB2A, HSFB2A	heat shock transcription factor B2A	0.02	OrthoFinder output from all 47 species
Aspi01Gene32423.t1	ATHSF1, HSF1,...	transcriptional regulator *(HsfA1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G059100.1	ATHSF1, HSF1,...	transcriptional regulator *(HsfA1) & original...	0.02	OrthoFinder output from all 47 species
LOC_Os06g35960.1	AT-HSFC1, HSFC1,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Len_g01287	ATHSFA1D, HSFA1D	transcriptional regulator *(HsfA1) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g21468	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g29245	HSF4, HSFB1,...	HSF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014027	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: CDS=77-1222	0.02	OrthoFinder output from all 47 species
Solyc12g098520.2.1	AT-HSFA5, HSFA5,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e006405_P001	HSFA1B, ATHSF3,...	transcription factor (HSF). transcriptional regulator (HsfA1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	53	142

External Links

No external refs found!

Sam_g17174

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation