1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00029p00106010

AMTR_s00029p00106010 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.107

Description : Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00106010
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 Archaeplastida
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 LandPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 LandPlants
AT1G55890 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT3G13160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 SeedPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 SeedPlants
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 SeedPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.01 SeedPlants
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.03 SeedPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 270
IPR002885 Pentatricopeptide_repeat 350 371
IPR002885 Pentatricopeptide_repeat 137 161
IPR002885 Pentatricopeptide_repeat 104 130
IPR002885 Pentatricopeptide_repeat 278 323
IPR002885 Pentatricopeptide_repeat 169 218
No external refs found!