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  5. Sam_g17076

Sam_g17076


Description : subcluster B phosphatase & original description: none


Gene families : OG0000687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000687_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17076

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene07944.t1 SSP5, Aspi01Gene07944 subcluster B phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71737.t2 SSP5, Aspi01Gene71737 subcluster B phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014238 SSP5 subcluster B phosphatase & original description: CDS=102-1616 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018354 SSP5 subcluster B phosphatase & original description: CDS=45-1544 0.02 OrthoFinder output from all 47 species
Sam_g24879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo424529 emb1860, TIM50 No description available 0.02 OrthoFinder output from all 47 species
Smo85337 No alias No description available 0.02 OrthoFinder output from all 47 species
Zm00001e040451_P004 SSP5, Zm00001e040451 RNA polymerase-II phosphatase. subcluster B phosphatase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004274 FCP1_dom 245 405
No external refs found!