AMTR_s00029p00105510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.106

Description : Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00105510
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 Archaeplastida
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 Archaeplastida
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.03 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 LandPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 LandPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.03 LandPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 LandPlants
AT1G55890 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT3G13160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 SeedPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 SeedPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.03 SeedPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 133 158
IPR002885 Pentatricopeptide_repeat 102 127
IPR002885 Pentatricopeptide_repeat 249 267
IPR002885 Pentatricopeptide_repeat 270 317
IPR002885 Pentatricopeptide_repeat 167 214
No external refs found!