Sam_g16914

Description : component *(RFC4) of PCNA sliding clamp loader complex & original description: none

Gene families : OG0006776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006776_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16914

Target	Alias	Description	ECC score	Gene Family Method
Adi_g045841	EMB1968, RFC4	component *(RFC4) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Aob_g04954	EMB1968, RFC4	component *(RFC4) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Ceric.10G083800.1	EMB1968, RFC4,...	component *(RFC4) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.12	EMB1968, RFC4	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01008825001	EMB1968, RFC4	Cell cycle.interphase.DNA...	0.02	OrthoFinder output from all 47 species
Ore_g04297	EMB1968, RFC4	component *(RFC4) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Tin_g03136	EMB1968, RFC4	component *(RFC4) of PCNA sliding clamp loader complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e039503_P002	EMB1968, RFC4,...	component RFC4 of PCNA sliding clamp loader complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	45	170
IPR013748	Rep_factorC_C	239	323

External Links

No external refs found!