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  5. Sam_g16839

Sam_g16839


Description : cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1) & original description: none


Gene families : OG0007280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16839

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193710 FLN1,... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G54090 FLN1 fructokinase-like 1 0.03 OrthoFinder output from all 47 species
Adi_g024685 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.02 OrthoFinder output from all 47 species
Ala_g18551 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.03 OrthoFinder output from all 47 species
Aop_g00620 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.02 OrthoFinder output from all 47 species
Dde_g02252 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.05 OrthoFinder output from all 47 species
Gb_05959 FLN1 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Gb_07834 FLN1 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os01g63220.2 FLN1, LOC_Os01g63220 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Solyc09g011850.4.1 FLN1, Solyc09g011850 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR011611 PfkB_dom 99 328
No external refs found!