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  5. Sam_g16644

Sam_g16644


Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16644

Target Alias Description ECC score Gene Family Method Actions
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.03 OrthoFinder output from all 47 species
Cre06.g278159 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g09042 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os06g16370.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Ore_g19380 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 232 274
IPR000315 Znf_B-box 3 45
IPR000315 Znf_B-box 46 90
No external refs found!