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Sam_g16587


Description : unfoldase component *(ClpX) of mitochondrion Clp-type protease complex & original description: none


Gene families : OG0001706 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001706_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16587

Target Alias Description ECC score Gene Family Method Actions
Adi_g089226 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.03 OrthoFinder output from all 47 species
Als_g29234 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.7 CLPX Protein degradation.peptidase families.serine-type... 0.01 OrthoFinder output from all 47 species
Gb_29683 CLPX chaperone component ClpX of mitochondrion Clp-type... 0.02 OrthoFinder output from all 47 species
Len_g09213 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.02 OrthoFinder output from all 47 species
Msp_g18556 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.03 OrthoFinder output from all 47 species
Nbi_g08299 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.02 OrthoFinder output from all 47 species
Pir_g01051 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.04 OrthoFinder output from all 47 species
Pir_g18218 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.03 OrthoFinder output from all 47 species
Pnu_g27624 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.03 OrthoFinder output from all 47 species
Solyc01g102990.3.1 Solyc01g102990 chaperone component ClpX of mitochondrion Clp-type... 0.03 OrthoFinder output from all 47 species
Tin_g13615 CLPX unfoldase component *(ClpX) of mitochondrion Clp-type... 0.04 OrthoFinder output from all 47 species
Zm00001e014150_P002 CLPX, Zm00001e014150 chaperone component ClpX of mitochondrion Clp-type... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 304 508
IPR019489 Clp_ATPase_C 515 591
No external refs found!