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  5. Sam_g16539

Sam_g16539


Description : subfamily ABCA transporter & original description: none


Gene families : OG0001879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16539
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT3G47790 ATH7, ATATH7 ABC2 homolog 7 0.02 OrthoFinder output from all 47 species
AT5G61700 ATH16, ATATH16 ABC2 homolog 16 0.02 OrthoFinder output from all 47 species
Aop_g04431 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016229 ATATH6, ATH6 subfamily ABCA transporter & original description: CDS=234-3275 0.03 OrthoFinder output from all 47 species
Ceric.18G061500.1 ATATH6, ATH6,... subfamily ABCA transporter & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.33G012600.1 ATATH6, ATH6,... subfamily ABCA transporter & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.67 ATATH4, ABCA5, ATH4 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Cre14.g618400 ATH7, ATATH7 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Cre17.g721000 ATH7, ATATH7 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
LOC_Os08g30770.1 ATATH6, ATH6,... subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Mp5g00540.1 ATH7, ATATH7 subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Mp7g18420.1 ATH7, ATATH7 subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Msp_g11278 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010130 ATH7, ATATH7 subfamily ABCA transporter & original description: CDS=142-3033 0.03 OrthoFinder output from all 47 species
Solyc03g113040.4.1 ATATH6, ATH6,... subfamily ABCA transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 733 877
No external refs found!